Kantor, Rose · Shakya, Migun · Ruth, Nelson · et al.
hybrid · semantic + lexical · 101 datasets ranked · 3.58s
Kantor, Rose · Shakya, Migun · Ruth, Nelson · et al.
2,095 rows · 907 KB · fasta, tsv
A virus genome database representing 21,015 near-complete virus genomes collected from untargeted ultra-deep RNA/DNA combined sequencing of wastewater. Sequence data was provided by the CASPER consortium and raw data may be found on NCBI SRA under bioprojects PRJNA1247874 and PRJNA1198001. Data underwent read trimming, rRNA and human read removal, de novo assembly, and selection of high-quality viral contigs. Contigs were clustered at 95% identity and 85% query coverage to dereplicate. Chimera-checking required at least two independent assemblies of the same viral genome or presence of the genome in another reference database. Annotation made use of RdRpCATCH, geNomad, checkV, BLASTN against NCBI core-nt, and RNAVirHost. The RdRp fasta files contain representative RdRp sequences identified through homology to major RdRp reference databases and clustered at 90% sequence identity over 75% sequence coverage. Included sequences contain all three conserved RdRp motifs (A, B, and C) arranged in either the canonical ABC configuration or the permuted CAB configuration.
Melnik, Elena
13 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
7 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
4 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
25 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
40 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
19 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
25 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
25 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
25 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Melnik, Elena
37 files · 4.5 MB · tiff
This data set contains thermographic images for the visualisation of watermarks. An IRCAM Equus 327k with Watermark Imager software (Fraunhofer) version 8.416 (R2016b) was used.
Wolf, Gerhard · Kolbe, Georg
2 files · 14 MB · pdf, tiff
Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen] Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
Wang, Yafei
15 files · 129 KB · tiff
A gridded time-series dataset reconstructing population distribution across the Yellow River Basin, China, from 1000 to 2000 AD, with a temporal resolution of one century and a spatial resolution of 10 km.
Wang, Wei · Liu, Cheng · Han, Lianhuan · et al.
10 files · 211 KB · tiff
Cyclic voltammograms (CVs) obtained at the 35-nm radius gold nanoelectrode in 0.5 M H2SO4 solution deoxygenated under argon at different scan rates (from 0.3 to 1 V/s). The potential range is 0-1.75 V vs RHE. The data in the text files is given in the following format: Potential vs. RHE (V) | Current (A) Scan rate is indicated in the text file name. The figure Voltammograms.tif shows all CVs in this dataset.
Hubbard, Alfred · Solares, Edwin · Hemming-Schroeder, Elizabeth
88 rows · 18 KB · fasta
These are the files needed to run the Broad Institute's malaria amplicon pipeline for the PvGAP Plasmodium vivax panel, described in detail here . They consist of FASTA files containing the forward and reverse primers and another FASTA file containing reference sequences for each target, derived from the PvP01 reference genome.
Yuan, Guangyuan
72 rows × 13 cols · 6.0 KB · csv, fasta
11 numeric · 2 categorical
This dataset supports the findings of the manuscript "Root anatomical traits modulate the assembly and nitrogen transformation potential of root-associated microbiomes in a temperate steppe" (NPH-MS-2026-55667). It contains root traits data, bacterial 16S rRNA gene absolute abundances, functional genes relative abundances, DNA extraction metadata, and phylogenetic marker sequences for 37 plant species from a temperate steppe ecosystem. The dataset includes the following files: 1. root traits.csv - Root traits including average diameter (AD), specific root length (SRL), specific root area (SRA), root tissue density (RTD), root nitrogen content (RNC), root carbon content (RCC), carbon‑nitrogen ratio (RCN), cortex layer number (CLN), cortex thickness (CT), and the ratio of cortex thickness to root diameter (CTRD). The first column lists plant species names. 2. Absolute abundance of 16S rRNA gene.csv - Quantitative PCR (qPCR) derived absolute abundances of bacterial 16S rRNA gene copies (copies/ng DNA) across different root compartments (rhizosphere, rhizoplane, endosphere), host species, root orders, and cotyledon classes (monocot/dicot). 3. DNA extraction sample weight.csv - Fresh weight (grams) of root material used for DNA extraction for each sample, linked by SampleID to the abundance data. 4. DNA extraction concentration.csv - Qubit‑measured DNA concentrations (ng/μL) and the sample volume (μL) used for quality control, together with sample metadata. 5. 37species.fasta - DNA sequences of two chloroplast markers (matK and rbcL) for the 37 plant species included in the study. The sequences are in FASTA format with headers formatted as ">Species". These were used for host phylogeny construction and Pagel's λ analyses. 6. Quantitative PCR results of functional gene.csv - Quantitative PCR (qPCR) derived relative abundances of bacterial 16S rRNA gene and functional genes across different root compartments (rhizosphere, rhizoplane, endosphere), host species, root orders, and cotyledon classes (monocot/dicot). 7. README.md - A detailed description of each file, column headers, abbreviations, units, and any missing value codings (NA). All data are provided to ensure transparency and reproducibility of the analyses. For methodological details, please refer to the Materials and Methods section of the associated publication. These data are under embargo until the associated research article is published. After that date, they will be freely available under a Creative Commons Attribution 4.0 International (CC BY 4.0) license. During the embargo period, the metadata (title, authors, abstract) and the DOI remain publicly visible, but the data files are not accessible. For access requests before the embargo expires, please contact the corresponding author.
Altenhoff, Adrian
6 files · 100 MB · hdf5
OMAmer - tree-driven and alignment-free protein assignment to subfamilies OMAmer is an alignment-free protein family assignment method designed to avoid overly specific subfamily predictions and to scale efficiently to phylogenomic databases containing thousands of genomes. It relies on an innovative approach that uses evolutionarily informed k-mers for alignment-free mapping to ancestral protein subfamilies. This dataset provides precomputed OMAmer databases derived from the Hierarchical Orthologous Groups in the OMA Browser . We aim to update these databases with every new OMA Browser release. Each OMAmer database is built using the latest version of the OMAmer package available at the time of the corresponding OMA Browser release. The dataset includes databases for different subsets of the species taxonomy. In most cases, we recommend using the LUCA.h5 database, which contains information from all species in the OMA database. The subset-specific databases are mainly useful when disk space is limited. The release May2026 is based on the OMA Browser release May 2026 which comprises 2983 species. We used OMAmer version 2.1.0 to build these databases.
Requena Rolanía, Jose María · Greif, Gonzalo · ROBELLO, CARLOS
1 files · 8.0 MB · fasta
This dataset contains the genome sequence for Trypanosoma cruzi (strain Dm28c). This genome sequence was de novo assembled using PacBio Hi-Fi and Illumina sequencing platforms by Greif et al (2026. PMID: 41501640). The genome was assembled into 32 contigs, which represent complete chromosomes. The provided Fasta file also contains an additional contig corresponding to the maxicircle (mitochondrial genome) sequence. The Fasta files included in this dataset were downloaded from GenBank (assembly GCA_044048535.1; May 22, 2026). Additional information about the Dm28cT2T genome assembly and gene annotations may be accessed through the link: https://cruzi.pasteur.uy/
Bar, Ido
9 files · 8.0 MB · gff, gzip
These files are downsampled WGS fastq files (250k paired-end reads each) of a fungal pathogen ( Ascochyta rabiei ), generated on MGI DNSeq-T7. The files are intended to be used directly as test datasets in PopFun - a Nextflow pipeline for variant calling in fungal genomes.
Burman, Nathaniel · Buyukyoruk, Murat · Wiegand, Tanner · et al.
4 files · 8.0 MB · fasta
This folder contains a multiple sequence alignment of Cas7 homologs in .fasta format, the domain-level annotations from PFAM and CasFinder, and an associated phylogenetic tree in .newick format.