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hybrid · semantic + lexical · 23 datasets ranked · 1.96s

Structuremodal23
Depthmeasured23
Licenseopen22non commercial1
Accessopen23
Formatpdf23csv2xlsx2tiff1zip1
Sourcezenodo-bio15zenodo8
clear
1-20 of 23sortrelevancemeasured firstqualitysize
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Morphosyntactic and Pragmatic Constructions in Jiepai Speech (Danyang, Jiangsu, China): An Emic Grammar Note

0.00

The Jiepai Archivist

3 files · 338 KB · pdf

Abstract This open-access release provides an emic grammar note on selected morphosyntactic and pragmatic constructions in Jiepai speech, a local Sinitic speech variety from the Wu-Jianghuai contact zone in Jiepai, Danyang, Jiangsu, China. The file is prepared as a grammar appendix to the Jiepai Jianghu section of the Chuanyue archive, an emic vernacular multimodal archive created by a native insider. The note documents selected structures in grammar, syntax, aspect, disposal, passive-related expression, locative marking, shared-use constructions, degree expression, and pragmatic usage. It includes notes on ge marking; completion-question and negative-completion forms such as geng and beng; aspectual distinctions related to Mandarin le and zhe; na disposal constructions; ha / bo constructions across passive, giving, and marriage-related contexts; locative suffixes; go shared-use constructions; yanlian parallel-action structures; degree adverbs and ironic intensification; and locative lai2 / A patterns. The document is based on the Archive Author's native-speaker knowledge and ongoing documentation of Jiepai speech. It does not present a complete grammar, final character standardization, final IPA transcription, phonetic analysis, or ELAN alignment. Phonetic, tonal, and character-form notes marked as provisional or pending verification are retained as research openings rather than resolved conclusions. Authorship and deposit roles are separate. The Archive Author, The Jiepai Archivist, is the creator, archive owner, rights holder, and public contact person. The uploader provides curatorial and deposit assistance only and is not the author, creator, archive owner, rights holder, or public contact for this archive.

open·CC-BY-NC-ND-4.0·Zenodo·completeSource
modal

Structured to Fail: Gender Bias in Large Language Models Across Text and Visual Modalities Through Data Feminism and Intersectionality in the Indian Context

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Poonia, NIkita · Saraswat, Dr. Niraja · Poonia, Dr. Arun Kumar

7 files · 107 KB · pdf

This repository contains the dataset associated with the study " Structured to Fail: Gender Bias in Large Language Models Across Text and Visual Modalities Through Data Feminism and Intersectionality in the Indian Context". The deposit includes a representative subset of the full study data, comprising the following components: Sample Design: Documentation of the sampling framework and run structure across the three LLM platforms examined Prompt Battery: The complete set of prompts administered across text and image generation tasks Model-Generated Text Outputs: Textual responses generated (1,020) by the models under the study Model-Generated Image Outputs: Visual outputs generated (480) in response through image-generation prompts Codebook: Provides complete instructions for all independent coders participating in the inter-rater reliability (IRR) study Inter-rater Reliability Dataset: The double-coded subset used to establish coding agreement Reported Reliability Scores: Cohen's Kappa values and percentage agreement statistics as reported in the manuscript

open·CC-BY-4.0·Zenodo·completeSource
modal

Intensivkapazitäten und COVID-19-Intensivbettenbelegung in Deutschland

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Robert Koch-Institut

9 files · 197 KB · csv, pdf, zip

Der Datensatz "Intensivkapazitäten und COVID-19-Intensivbettenbelegung in Deutschland" des Robert Koch-Instituts dokumentiert die tägliche intensivmedizinische Versorgungslage seit der COVID-19-Pandemie. Basierend auf Meldungen aller intensivbettenführenden Krankenhäuser in Deutschland erfasst das DIVI-Intensivregister Echtzeitdaten zu belegten und freien Intensivbetten. Die Erhebung differenziert nach Altersgruppen, Regionen und Versorgungsstufen. COVID-19-Fälle auf Intensivstationen werden gesondert ausgewiesen. Die Daten stehen aggregiert auf Bundes-, Landes- und Kreisebene zur Verfügung. Damit bildet der Datensatz eine Grundlage für die Überwachung von Kapazitäten, die Koordination von Behandlungskapazitäten und politische Entscheidungsprozesse während der Pandemie und darüber hinaus.

open·CC-BY-4.0·Zenodo·completeSource
modal

Open-Access Digital Humanities Research (2016-2026)

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Suwarno · Akun, Andreas

2 files · 295 KB · pdf, xlsx

File ini merupakan data mentah ( raw data ) ekspor dari database Scopus yang digunakan untuk melakukan pemetaan, analisis bibliometrik, atau Tinjauan Literatur Sistematis (SLR) mengenai tren riset di bidang Digital Humanities.

open·CC-BY-4.0·Zenodo·completeSource
modal

Penig Löwen-Apotheke (1924 / 1948)

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Wolf, Gerhard · Kolbe, Georg

2 files · 14 MB · pdf, tiff

Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen] Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).

open·CC-BY-4.0·Zenodo·completeSource
modal

PD5D long read DNA-seq

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Kim, Kwanho · Lin, Zechuan · Simmons, Sean · et al.

1 files · 37 KB · pdf

This dataset contains CCS corrected HiFi long-read DNA sequencing (lrDNAseq) in FASTQ format for 100 PMDBS samples from Parkinson's patients and healthy controls. It's part of the PD5D atlas, where the same subjects were also profiled with other omics assays including genotyping, single-cell ATACseq, and spatial transcriptomics.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

PD5D midbrain single-nucleus RNA-seq hybrid selection

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Kim, Kwanho · Lin, Zechuan · Simmons, Sean · et al.

1 files · 37 KB · pdf

This dataset contains raw FASTQ files from the midbrain single-nucleus RNA sequencing (snRNAseq) dataset with hybrid selection for the matching PMDBS samples from the PD5D chort. The same subjects were also profiled with other omics assays including genomic DNAseq, genotyping, single-cell ATACseq, and spatial transcriptomics.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei RNA sequencing (10x) of postmortem cingulate cortex and midbrain of healthy donors and Parkinson's disease patients – 10x snRNA-seq.

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Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 37 KB · pdf

This dataset consists of raw sequencing snRNA-seq data (10x Genomics Chromium Next GEM Single Cell 3ʹ). The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocol followed to isolate nuclei from postmortem brain samples and to prepare sequencing libraries can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a single sequencing library. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei RNA sequencing (ParseBio) of postmortem cingulate cortex and midbrain of healthy donors and Parkinson's disease patients.

0.00

Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 36 KB · pdf

This dataset consists of raw sequencing snRNA-seq data using ParseBio Evercode Whole Transcriptome. The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocol followed to isolate nuclei from postmortem brain samples and to prepare sequencing libraries can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a specific ParseBio barcode. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei ATAC sequencing of postmortem cingulate cortex and midbrain of healthy donors and Parkinson's disease patients – 10x snATAC-seq.

0.00

Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 36 KB · pdf

This dataset consists of raw sequencing snATAC-seq data (10x Genomics Chromium Next GEM Single Cell ATAC v2). The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocol followed to isolate nuclei from postmortem brain samples and to prepare sequencing libraries can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a single sequencing library. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors. (edited)

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei ATAC sequencing of postmortem cingulate cortex of healthy donors and Parkinson's disease patients – HyDrop-ATAC v2

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Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 36 KB · pdf

This dataset consists of raw sequencing snATAC-seq data (HyDrop v2). The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocol followed to isolate nuclei from postmortem brain samples can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a single sequencing library. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei ATAC sequencing of postmortem cingulate cortex and midbrain of healthy donors and Parkinson's disease patients – Scale-ATAC + 10x Genomics.

0.00

Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 36 KB · pdf

This dataset consists of raw sequencing ATAC-seq data (Scale-ATAC pre-indexing followed by 10x Genomics snATAC v2). The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocol followed to isolate nuclei from postmortem brain samples and to prepare sequencing libraries can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a single sequencing library. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei ATAC sequencing of postmortem cingulate cortex of healthy donors – Scale-ATAC + HyDrop v2.

0.00

Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 36 KB · pdf

This dataset consists of raw sequencing ATAC-seq data (Scale-ATAC + HyDrop v2). The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocols followed to isolate nuclei from postmortem brain samples and to prepare sequencing libraries can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a single sequencing library. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108 ) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single nuclei RNA sequencing of postmortem cingulate cortex, midbrain and motor cortex of healthy donors and Parkinson's disease patients – 10x multiome (snRNA-seq and snATAC-seq).

0.00

Pančíková, Alexandra · Theunis, Koen · Hulselmans, Gert · et al.

1 files · 37 KB · pdf

This dataset consists of raw sequencing snRNA-seq data and snATAC-seq data (10x Genomics Chromium Next GEM Multiome ATAC/GEX). The data is part of an overall set of samples derived from postmortem midbrain (n=140), cingulate cortex (n=190) and motor cortex (n=4) of healthy donors (n=114), patients with Parkinson's disease (n=75) or patients with other neurological disorder (n=1). The protocol followed to isolate nuclei from postmortem brain samples and to prepare sequencing libraries can be found below. To increase throughput and to decrease batch effects, several donors have been pooled together into a single sequencing library. To computationally demultiplex the nuclei to their corresponding donors, cellsnp-lite (version commit: aad18644adcde853c313362a856a24245c9b91f7) followed by vireo (https://github.com/single-cell-genetics/vireo/pull/108 ) has been used. The population VCF with the donor genotypes derived from whole genome sequencing data has been used to assign nuclei back to their donors. (edited)

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single-cell RNAseq of human PBMCs from healthy control, RBD, and PD.

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MacDonald, Adam · Stratton, Jo Anne

1 files · 35 KB · pdf

We performed 10X Genomics single-cell RNAsequencing of human prepheral blood mononuclear cells from healthy control, PD and RBD patients. This dataset contains raw FASTQ files. Sequencing was performed using NovaSeq 6000 S4 PE 100bp. Reads were processed using the 10X Genomics Cell Ranger Single Cell 2.0.0 pipeline. FASTQs generated from sequencing output were aligned to the human GRCh38 reference genome using STAR algorithm 2.7.3a.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Bulk RNAseq of mouse substantia nigra of wild type and PINK1 KO mice after C.rodentium infection

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Stratton, Jo Anne · Mukherjee, Sriparna · Trudeau, Louis-Eric

1 files · 5.0 KB · pdf

We performed bulk RNAsequencing of substantia nigra from wild type and PINK1 KO mice 26-days post C.rodentium infection. This dataset contains raw fastq files from striatal cells, sorted into 4 groups namely wild type and PINK1 KO uninfected and infected mice. Sequencing was performed using NextSeq500. FASTQs generated from sequencing output were aligned to the mm10 reference genome using STAR aligner.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Bulk RNAseq of mouse striatum of wild type and PINK1 KO mice after C.rodentium infection

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Stratton, Jo Anne · Mukherjee, Sriparna · Trudeau, Louis-Eric

1 files · 6.1 KB · pdf

We performed bulk RNAsequencing of striatum from wild type and PINK1 KO mice 26-days post C.rodentium infection. This dataset contains raw fastq files from striatal cells, sorted into 4 groups namely wild type and PINK1 KO uninfected and infected mice. Sequencing was performed using NextSeq500. FASTQs generated from sequencing output were aligned to the mm10 reference genome using STAR aligner.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single-cell RNAseq of human iPSC-derived wild type and PINK1 KO myeloid cells after lipopolysaccharide and interleukin-1 beta challenge

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Recinto, Sherilyn · Stratton, Jo Anne

1 files · 6.1 KB · pdf

We performed 10X Genomics single-cell RNAsequencing of human iSPC-derived monocytes and macrophages in vitro. Cells were treated with 500 ng/mL lipopolysaccharide (LPS) and 50 ng/mL interleukin-1 beta (IL1b) for 24 hours. This dataset contains raw FASTQ files from myeloid cells, sorted into 4 groups namely monocytes (Mono) and Macrophages (Mac) non-stimulated (NS) and LPS+IL1b-stimulated cells. Sequencing was performed using NovaSeq 6000 S4 PE 100bp. Reads were processed using the 10X Genomics Cell Ranger Single Cell 2.0.0 pipeline. FASTQs generated from sequencing output were aligned to the human GRCh38 reference genome using STAR algorithm 2.7.3a.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single-cell RNAseq of lamina propria in wild type and LRRK2 G2019S mice after C. rodentium infection

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Recinto, Sherilyn · Stratton, Jo Anne · Pei, Jessica · et al.

2 files · 6.0 KB · pdf

We performed 10X Genomics single-cell RNAsequencing of colonic lamina propria cells from wild type and LRRK2 G2019S mice following 1-week post C. rodentium infection. The cells were pooled from 3 mice per group of both sexes at 8-12 weeks of age. This dataset contains raw FASTQ files from mouse colonic lamina propria, sorted into 4 groups namely wild type and LRRK2 G2019S uninfected and infected mice. Sequencing was performed using NovaSeq 6000 S4 PE 100bp. Reads were processed using the 10X Genomics Cell Ranger Single Cell 2.0.0 pipeline. FASTQs generated from sequencing output were aligned to the mouse GRCm38 reference genome using STAR algorithm 2.7.3a.

open·CC-BY-4.0·zenodo-bio·completeSource
modal

Single-cell RNAseq of colonic lamina propria in wild type and PINK1 KO mice after C. rodentium infection

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Recinto, Sherilyn · Stratton, Jo Anne

1 files · 5.7 KB · pdf

We performed 10X Genomics single-cell RNA sequencing of colonic lamina propria cells from wild type and PINK1 KO mice following either 1-week or 2-weeks post C. rodentium infection. The cells were pooled from 3 mice per group of both sexes at 8-12 weeks of age. This dataset contains raw FASTQ files from mouse colonic lamina propria, sorted into 8 groups namely wild type and PINK1 KO uninfected and infected mice at 1- or 2-weeks post-infection. Sequencing was performed using NovaSeq 6000 S4 PE 100bp. Reads were processed using the 10X Genomics Cell Ranger Single Cell 2.0.0 pipeline. FASTQs generated from sequencing output were aligned to the mouse GRCm38 reference genome using STAR algorithm 2.7.3a.

open·CC-BY-4.0·zenodo-bio·completeSource
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