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hybrid · semantic + lexical · 3 datasets ranked · 0.73s

Structurecomposite1sequence1
Depthmeasured2cataloged1
Licenseopen3
Accessopen3
Formatfastq2csv1fasta1gzip1pdf1
Sourcezenodo2zenodo-bio1
clear
1-3 of 3sortrelevancemeasured firstqualitysize
composite

Raw data for 'Microbiota-constrained bacterial density limits phage infection in the gut and allows persistence of susceptible cells'

0.00

Bertola, Anouk · Wenner, Nicolas · LEMOS ROCHA, Leonardo Filipe · et al.

sqlite1
xlsx1
16 files · 8.0 MB · fastq, gzip, xlsx

Sequencing data and raw data for Bertola et al .

open·CC-BY-4.0·Zenodo·completeSource
sequence

DNA Sequencing

0.00

Bos

6 files · 8.0 MB · fastq

DNA sequencing data: No mutations (SNPs or genetic rearrangements) were identified using the following tools Breseq Variant Report - v0.35. for the cells cultured with EVs, with and without Pmb. The reference sequence used to map the FASTQ files: Escherichia coli strain K-12 MG1655 ( E. coli reference genome), RefSeq ID: GCF_000005845.1 - genome assembly: ASM584v2.

open·CC-BY-4.0·zenodo-bio·completeSource
declared

Software and AMR peptide database for 'PEPTiGEN: a tool for mining antimicrobial resistance PEPTides using GENe data of public available repositories'

0.00

Meekes, Lisa · Tabaro, Francesco · Bexkens, Michiel · et al.

41 files · 8.2 GB · csv, fasta, pdfdeclared

This record contains the Python software for PEPTiGEN, a tool for generating tryptic peptides from prokaryotic gene sequences and their variants, and the associated antimicrobial resistance (AMR) peptide database. The database is provided as an SQL file and a CSV file containing all genes and predicted peptides. The README file contains explanation of the PEPTiGEN tool. The SQL database schema files contains both the database schema of the SQL database used in the PEPTiGEN analysis as the database schema of the AMR peptide datbase.

open·CC-BY-4.0·Zenodo·completeSource

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