Han, Bingbing · Li, Zhaolei

2 files · 429 KB · xlsdeclared

This dataset compiles published observational data of soil galactosamine across global terrestrial ecosystems. Relevant data were extracted from peer-reviewed literature via a systematic literature screening workflow, encompassing measured concentrations of soil amino galactose as well as matching covariates including soil properties, climatic conditions, microbial attributes, and ecosystem characteristics. All records in this dataset were harmonized through standardized unit conversion, rigorous quality control and cross-consistency verification to facilitate cross-study comparative analyses. This dataset is applicable to investigations into the global biogeographical distribution patterns of soil galactosamine.

Valencia Arias, Jhoany Alejandro · Rodríguez-Lora, Vanessa · Rua Hernandez, Juan Camilo · et al.

2 files · 2.0 MB · csv, xlsdeclared

This dataset contains the bibliographic records retrieved from the Web of Science Core Collection and Scopus databases for a bibliometric analysis of digital collaborative learning. The dataset includes the original export files from both databases in their native formats, preserving the complete bibliographic metadata required for bibliometric and science mapping analyses. The records were collected using a predefined search strategy designed to ensure transparency and reproducibility. These data can be used to replicate the bibliometric analysis, validate the study findings, or conduct complementary analyses using bibliometric software such as Bibliometrix, VOSviewer, CiteSpace, or similar tools. The dataset comprises the following files: Web of Science.xls: Original bibliographic records exported from the Web of Science Core Collection. Scopus.csv: Original bibliographic records exported from Scopus. The data are provided without modification to preserve the integrity of the original database exports. Researchers reusing these data should acknowledge the original data sources (Web of Science and Scopus) and cite this dataset accordingly.

Imanifard, Zahra · Penati, Francesca · Padoa, Sofia · et al.

6 files · 128 KB · xls, xlsxdeclared

This dataset contains the raw experimental data supporting the article "Moss-derived recombinant Factor H, CPV-104, effectively antagonizes alternative pathway C3/C5 convertases stabilization by NeFs from patients with primary C3 glomerulopathy", published in Frontiers in Immunology, 2026 . The dataset includes the following files: Western blot raw data (Figure 1, Supplementary Figure S1, and Supplementary Table S1). Western blot raw data (Figure 2, Supplementary Figure S2, and Supplementary Table S2). ELISA C3a raw data (Figures 3A, 4A, and 4B). ELISA C3a raw data (sCR1 experiments). ELISA Ba raw data (Figures 3B, 4C, and 4D). The files contain the original experimental data underlying the figures and supplementary material reported in the associated publication.

Han, Jin-fen · Wang, Xin · Yin, Bin · et al.

1 files · 63 KB · xlsdeclared

Pairwise distance (lower-left matrix) and number of nucleotide variance (upper-right matrix) of COI-5P sequence among the taxa in this study

Han, Jin-fen · Wang, Xin · Yin, Bin · et al.

1 files · 87 KB · xlsdeclared

Pairwise distance (lower-left matrix) and number of nucleotide variance (upper-right matrix) of rbcL sequence among the taxa in this study

BASUMATARY, BWSRANG

1 files · 18 KB · xlsdeclared

Anda dapat meminta bantuan Customer Service (CS) untuk membuka blokir melalui chat WhatsApp resmi Bank Woori Saudara di nomor +62 821-4444-012. Pastikan Anda sudah menyiapkan data diri seperti buku tabungan dan nomor rekening untuk proses verifikasi.

Meekes, Lisa · Tabaro, Francesco · Bexkens, Michiel · et al.

41 files · 8.2 GB · csv, fasta, pdfdeclared

This record contains the Python software for PEPTiGEN, a tool for generating tryptic peptides from prokaryotic gene sequences and their variants, and the associated antimicrobial resistance (AMR) peptide database. The database is provided as an SQL file and a CSV file containing all genes and predicted peptides. The README file contains explanation of the PEPTiGEN tool. The SQL database schema files contains both the database schema of the SQL database used in the PEPTiGEN analysis as the database schema of the AMR peptide datbase.

Sieving, Kathryn

2 files · 697 KB · pdf, xlsdeclared

Two files in this archive associated with ms (to be submitted to Ecology or similar journal): " Changes in attitude with latitude: Leadership of winter bird mobs in the Eastern US ". Contents of this archive: A word file with a table explaining the columns in the data file and all model codes used to analyze the data set. An excel file with the data.

Tjuatja, Vincent · Keramat, Alireza · Duan, Huan-Feng

5 files · 123 KB · xlsdeclared

This dataset contains all the data for the article titled "Transient Resonant Peak Sequencing for Multiple-Leaks Localization: A Novel Graphical Framework". There has been a minor change in Figure ordering in the article. Figure 3a and Figure 3b refers to the FRF of the system with a single leak with xL/L = 0.1 and 0.14. Figure 12 a,b,c,d refers to the FRF of the system with two leaks denoted as validation case 1,2,3,4 with the leak ratio of 1.0. Figure 14 a,b,c,d refers to the FRF of the system with two leaks denoted as case 1,2,3,4 with the leak ratio of 0.8. Figure 16 a,b,c,d refers to the FRF of the system with two leaks denoted as case 1,2,3,4 with the leak ratio of 0.6. In the v.2 version, the following information are added: Validation where the leak ratio is 0.2 and 0.4 Combined order table with the ratio of 0.2 and 0.4 Distance ratio 0.2 and 0.4: The distance between the true leak locations with the closest bound of leak subdomain Sensitivity result summary: Shows the summary of method's performance when the noisy data is considered Sensitivity case 1 realization 0: Example of noisy data used for suggesting alternative to the method in the existence of noise Combined order table with ratio 1.0 sens: This is the combined order table assuming only four measurement points are considered Combined metrics noisy / noiseless classification: This is the summary of recall, precision, and F1 score of different class for CatBoost model based on noiseless and noisy data Confusion matrix noisy / noiseless classification: This is the confusion matrix of the CatBoost model based on noiseless and noisy data Regression data ML: This is the result of regression based on CatBoost model given the leak locations are directly added Comparison_ITA_instance: The pkl file for ITA training instance In the v.3 version, the following information is uploaded: Combined metrics noisy/noiseless classification_fix Confusion matrix noisy/noiseless classifcation_fix A labelling error was noticed in the original csv file (label 1-10-11-12-...) where the label is ordered based on string. In reality, the true label (label 1-2-3-...) is ordered based on integer. The numeric value remains unchanged, but just the label is changed. Comparison_ITA_instance_makefairer: The pkl file for additional ITA training instance given an assumed leak ratio to make a fairer comparison.

de Gonzalo Calvo, David · Perez-Pons, Manel

11 files · 236 KB · xlsdeclared

This repository contains the analysis code associated with the study "Integration of the circulating miRNome and clinical information to predict 90-day mortality in elderly COVID-19 subphenotypes." The archived source code reproduces the computational and statistical analyses reported in the manuscript, including: Differential expression analysis of circulating miRNAs. Identification of clinical subphenotypes using clustering approaches. Machine learning-based prognostic modeling using VSURF. Model interpretation and performance evaluation. Functional enrichment analysis of miRNA target genes. The repository includes the R scripts required to reproduce the analyses described in the manuscript, together with the input files necessary for the functional enrichment analyses. The corresponding miRNA expression dataset (Cq values) is available in Zenodo at https://doi.org/10.5281/zenodo.21261462 . The original development repository is publicly available on GitHub: https://github.com/mprz99/Machine-learning-and-miRNA-based-prediction-of-90-day-mortality-in-elderly-COVID-19-subphenotypes This archived version has been deposited to provide a permanent, citable record of the code used in the published study and to ensure computational reproducibility.

Favaro, Rebecca · Facheris, Paola · formai, alessandra · et al.

1 files · 303 KB · xlsdeclared

This record contains raw data related to article "Risankizumab differentially modulates circulating T-cell populations in psoriasis according to autoreactivity status" Abstract Background: In a recent paper, our group described that the presence of double autoreactivity to both LL37 and ADAMTSL5 autoantigens in psoriatic patients decreased the clinical responses to risankizumab, but how this influences the changes in the peripheral inflammatory T-cell populations is still unknown. Objective: This study aims to evaluate how risankizumab modulates the circulating inflammatory T-cell populations in psoriatic patients and, specifically, in autoreactive subjects. Methods: The presence of LL37- and ADAMTSL5-reactive circulating T-cells was assessed in a cohort of 142 psoriatic patients, and 87 demonstrated autoreactivity at baseline. Patients were treated with risankizumab for 52 weeks, and specific T-cell populations were analyzed at different timepoints. Results: The frequency of Ki67+CD4+, Ki67+CD8+ T-cells, CD8+IL-17+ and CD8+IL-22+ T-cells showed a positive correlation with baseline PASI and decreased with treatment. Notably, CD8+IL-17+ T-cells decreased both in single-LL37 and single-ADAMTSL5-reactive subjects, but not in subjects that showed autoreactivity to both autoantigens. LL37 autoreactivity of CD4+ and CD8+ T-cells decreased with treatment, but not for CD4+ in double-reactive subjects. While Treg frequency negatively correlated with baseline PASI and increased within 16 weeks of treatment, significantly decreasing the IL-17+CD4+/Treg ratio over time, Treg modulation was not evident in double-reactive subjects. Interestingly, the subpopulations of CD8+MAIT IL-17+ and CD3+MAIT IL-22+ cells, involved also in psoriatic arthritis, decreased in treated subjects following IL-23 inhibition. Conclusion: Rizankizumab efficiently decreases the circulating inflammatory T-cell populations and modulates Tregs' plasticity in single-LL37- or single-ADAMTSL5-reactive subjects, but not in double-reactive subjects. Keywords: ADAMTSL5; LL37; autoantigens; autoreactivity; biomarkers; psoriasis. Copyright © 2025 Japanese Society for Investigative Dermatology. Published by Elsevier B.V. All rights reserved.